docs: adding missing pipelines cli prefix#4257
Open
simojoe wants to merge 2 commits into
Open
Conversation
✅ Deploy Preview for nf-core-main-site ready!
To edit notification comments on pull requests, go to your Netlify project configuration. |
mashehu
approved these changes
Jul 1, 2026
mashehu
left a comment
Contributor
There was a problem hiding this comment.
thanks for these fixes. just some small suggestions
| This first "vanilla" commit which is identical to the output from the templating tool is important, as it allows us to keep your pipeline in sync with the base template in the future. | ||
| A full description of the file structure and all files created in the initial pipeline setup can be found [here](https://nf-co.re/docs/contributing/pipelines/pipeline_file_structure). | ||
| See the [nf-core syncing docs](https://nf-co.re/docs/tutorials/sync/overview) for more information on how the syncing works. | ||
| See the [nf-core pipelines sync docs](https://nf-co.re/docs/tutorials/sync/overview) for more information on how the syncing works. |
Contributor
There was a problem hiding this comment.
Suggested change
| See the [nf-core pipelines sync docs](https://nf-co.re/docs/tutorials/sync/overview) for more information on how the syncing works. | |
| See the [nf-core syncing docs](https://nf-co.re/docs/tutorials/sync/overview) for more information on how the syncing works. |
we mean the process not the actual command here 🙂
| | `nf-core download{:bash}` | `nf-core pipelines download{:bash}` | | ||
| | `nf-core create-params-file{:bash}` | `nf-core pipelines create-params-file{:bash}` | | ||
| | `nf-core create{:bash}` | `nf-core pipelines create{:bash}` | | ||
| | `nf-core lint{:bash}` | `nf-core pipelines lint{:bash}` | |
Contributor
There was a problem hiding this comment.
what was wrong with this line?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Closes nf-core/tools#3287
I used the breaking changes in the CLI commands from the blog post of release 3.0.0. I only modified information that was from 3.0.0 and more.
https://nf-co.re/blog/2024/tools-3_0_0
This is my first naïve contribution to the website repository, please let me know if I skipped some relevant steps.
@netlify /api_reference/3.0.0/api/pipelines/create