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eeabb90
Initial tutorial draft
christopher-hakkaart May 21, 2026
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Read and manual deslop
christopher-hakkaart May 24, 2026
3782592
Put it together section
christopher-hakkaart May 24, 2026
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Merge branch 'main' into chris-config-user-guide
christopher-hakkaart May 25, 2026
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Links
christopher-hakkaart May 25, 2026
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[automated] Fix code linting
nf-core-bot May 25, 2026
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Fix link
christopher-hakkaart May 25, 2026
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Learn more
christopher-hakkaart May 25, 2026
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Merge branch 'main' into chris-config-user-guide
christopher-hakkaart May 28, 2026
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Merge branch 'main' into chris-config-user-guide
christopher-hakkaart Jun 3, 2026
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First batch of fixes
christopher-hakkaart Jun 8, 2026
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Messy merge after moving a section
christopher-hakkaart Jun 8, 2026
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Merge branch 'chris-config-user-guide' of github.com:nf-core/website …
christopher-hakkaart Jun 8, 2026
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Fix
christopher-hakkaart Jun 8, 2026
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Missed some
christopher-hakkaart Jun 8, 2026
70d252c
Fix consistency issues
christopher-hakkaart Jun 8, 2026
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[automated] Fix code linting
nf-core-bot Jun 16, 2026
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Apply suggestions from code review
christopher-hakkaart Jun 18, 2026
75cdae3
Start updating commands and instructions using demo 1.2.0
jfy133 Jun 25, 2026
95dfe22
Continue custom config real commands
jfy133 Jun 25, 2026
cb29245
Clean up
christopher-hakkaart Jul 6, 2026
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christopher-hakkaart Jul 6, 2026
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Merge branch 'main' into chris-config-user-guide
christopher-hakkaart Jul 13, 2026
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Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,7 @@ Version information is automatically recorded in pipeline reports in the `pipeli

Now that you've successfully run your first nf-core pipeline:

- Complete the [Configure a pipeline run](../running/tutorials/configure-a-pipeline-run.md) tutorial, a more comprehensive, hands-on walkthrough of every configuration layer (environment variables, parameters, profiles, custom config files, and `ext.args`) using `nf-core/demo` as the worked example
- Browse the [nf-core pipeline catalog](https://nf-co.re/pipelines) to find workflows for your research area
- Learn to [adjust resource requirements and parameters](../running/configuration/overview.md) for your infrastructure
- Join the [nf-core Slack](https://nf-co.re/join/slack) community
6 changes: 6 additions & 0 deletions sites/docs/src/content/docs/running/overview.md
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Expand Up @@ -25,6 +25,12 @@ nf-core pipelines can be configured to work with different execution environment
- **[System requirements](configuration/nextflow-for-your-system):** Guidance on configuring pipelines to match your system's capabilities, including resource allocation, executors, and tool arguments
- **[Configuration troubleshooting](configuration/troubleshooting):** Troubleshoot nf-core pipeline runs

## Tutorials

Hands-on walkthroughs that build on the reference material above.

- **[Configure a pipeline run](tutorials/configure-a-pipeline-run):** Hands-on tutorial using nf-core/demo to configure a run with environment variables, parameters, and config files

## Reference data

Many nf-core pipelines require reference genomes and annotation files.
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