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1. Image_toolbox Image_toolbox Public

   This is my toolbox for image processing and downstream analysis of calcium imaging data.

   Jupyter Notebook 5 3

2. Fishlines Fishlines Public

   This is a toy program to operate the database of zebrafish lines that I am maintaining.

   C++ 1

3. FIJI_tools FIJI_tools Public

   A collection of handy FIJI macros for image processing.

   Python

4. CalAnalyzer CalAnalyzer Public

   The downstream analysis toolbox of processed calcium imaging data. Former 'analysis' and 'visualization' folders in the repository 'Image_toolbox'. A GUI module is included.

   Python

5. Filter_wheel Filter_wheel Public

   A filter wheel controller system based on Arduino and Parallax servos.

   Python

6. Phase_Retrieval Phase_Retrieval Public

   An implementation of the phase-retrieval algorithm for pupil function calculation.

   Python 1