Lotfollahi-lab
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nichecompass-reproducibility
nichecompass-reproducibility PublicReproducible analyses for the NicheCompass manuscript
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Showing 10 of 19 repositories
- cherimoya_context_aware Public Forked from jmschrei/cherimoya
This is an extension of Cherimoya that adds a conditioning context vector (typically trans-regulatory context) to the sequence-to-function skeleton. It explores different conditioning architectures and makes them swappable for easy benchmarking.
- Perturbgen Public
- tripso Public
- mintflow Public template
Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data
- PerturbGen_reproducibility Public
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